No. words: 1849; after pruning: 1823


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.2 (1,1:998)  823  0.24 0.12 0.12  (UMN171F)_D05_BE443995At02P166G03P166H061F1_041.ab1       66   915 (0)  C (UMN171R)_D05_BE443995At02P166G03P166H061R1_041.ab1   (0)   934    85 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  414 nodes

 209 str. conn. components

Path
    1    (UMN171F)_D05_BE443995At02P166G03P166H061F1_041.ab1     1 
  526  C (UMN171R)_D05_BE443995At02P166G03P166H061R1_041.ab1   475 
Contig length: old 999, new 1000

Contig length: old 1000, new 1000
New start: 0