No. words: 1557; after pruning: 1531


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.0 (1,1:944)  594  0.33 0.00 0.00  (UMN172F)_G09_BE443995Ld02P166G03P166H061F1_067.ab1      272   883 (0)  C (UMN172R)_G09_BE443995Ld02P166G03P166H061R1_067.ab1   (0)   674    63 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1    (UMN172F)_G09_BE443995Ld02P166G03P166H061F1_067.ab1     1 
  550  C (UMN172R)_G09_BE443995Ld02P166G03P166H061R1_067.ab1   396 
  554    (UMN172F)_G09_BE443995Ld02P166G03P166H061F1_067.ab1   554 
  618  C (UMN172R)_G09_BE443995Ld02P166G03P166H061R1_067.ab1   328 
  622    (UMN172F)_G09_BE443995Ld02P166G03P166H061F1_067.ab1   622 
  630  C (UMN172R)_G09_BE443995Ld02P166G03P166H061R1_067.ab1   316 
  638    (UMN172F)_G09_BE443995Ld02P166G03P166H061F1_067.ab1   638 
  650  C (UMN172R)_G09_BE443995Ld02P166G03P166H061R1_067.ab1   296 
  654    (UMN172F)_G09_BE443995Ld02P166G03P166H061F1_067.ab1   654 
  670  C (UMN172R)_G09_BE443995Ld02P166G03P166H061R1_067.ab1   276 
  698    (UMN172F)_G09_BE443995Ld02P166G03P166H061F1_067.ab1   698 
  714  C (UMN172R)_G09_BE443995Ld02P166G03P166H061R1_067.ab1   232 
  738    (UMN172F)_G09_BE443995Ld02P166G03P166H061F1_067.ab1   738 
  742  C (UMN172R)_G09_BE443995Ld02P166G03P166H061R1_067.ab1   204 
  786    (UMN172F)_G09_BE443995Ld02P166G03P166H061F1_067.ab1   786 
  790  C (UMN172R)_G09_BE443995Ld02P166G03P166H061R1_067.ab1   156 
Contig length: old 945, new 945

Contig length: old 945, new 945
New start: 0