No. words: 1556; after pruning: 1530


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:945)  588  0.49 0.00 0.00  (UMN172F)_B10_BE443995Ld05P166G03P166H061F1_078.ab1       94   703 (0)  C (UMN172R)_B10_BE443995Ld05P166G03P166H061R1_078.ab1   (0)   853   244 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1    (UMN172F)_B10_BE443995Ld05P166G03P166H061F1_078.ab1     1 
  206  C (UMN172R)_B10_BE443995Ld05P166G03P166H061R1_078.ab1   741 
  210    (UMN172F)_B10_BE443995Ld05P166G03P166H061F1_078.ab1   210 
  246  C (UMN172R)_B10_BE443995Ld05P166G03P166H061R1_078.ab1   701 
  258    (UMN172F)_B10_BE443995Ld05P166G03P166H061F1_078.ab1   258 
  262  C (UMN172R)_B10_BE443995Ld05P166G03P166H061R1_078.ab1   685 
  270    (UMN172F)_B10_BE443995Ld05P166G03P166H061F1_078.ab1   270 
  274  C (UMN172R)_B10_BE443995Ld05P166G03P166H061R1_078.ab1   673 
  294    (UMN172F)_B10_BE443995Ld05P166G03P166H061F1_078.ab1   294 
  302  C (UMN172R)_B10_BE443995Ld05P166G03P166H061R1_078.ab1   645 
Contig length: old 946, new 946

Contig length: old 946, new 946
New start: 0 
S Change at: 106; seg lengths: entry 1, contig 1