No. words: 1540; after pruning: 1514


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:944)  560  1.01 0.00 0.17  (UMN172F)_E12_BE443995Ld08P166G03P166H061F1_088.ab1       95   689 (0)  C (UMN172R)_E12_BE443995Ld08P166G03P166H061R1_088.ab1   (0)   851   258 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1    (UMN172F)_E12_BE443995Ld08P166G03P166H061F1_088.ab1     1 
  329  C (UMN172R)_E12_BE443995Ld08P166G03P166H061R1_088.ab1   618 
  333    (UMN172F)_E12_BE443995Ld08P166G03P166H061F1_088.ab1   333 
  337  C (UMN172R)_E12_BE443995Ld08P166G03P166H061R1_088.ab1   610 
  345    (UMN172F)_E12_BE443995Ld08P166G03P166H061F1_088.ab1   345 
  365  C (UMN172R)_E12_BE443995Ld08P166G03P166H061R1_088.ab1   582 
  385    (UMN172F)_E12_BE443995Ld08P166G03P166H061F1_088.ab1   385 
  397  C (UMN172R)_E12_BE443995Ld08P166G03P166H061R1_088.ab1   550 
Contig length: old 945, new 946

Contig length: old 946, new 946
New start: 0