No. words: 1442; after pruning: 1416


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.6 (1,1:927)  492  0.58 0.00 0.00  (UMN172F)_F12_BE443995Ld09P166G03P166H061F1_086.ab1      141   653 (0)  C (UMN172R)_F12_BE443995Ld09P166G03P166H061R1_086.ab1   (1)   788   276 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1    (UMN172F)_F12_BE443995Ld09P166G03P166H061F1_086.ab1     1 
  313  C (UMN172R)_F12_BE443995Ld09P166G03P166H061R1_086.ab1   616 
  321    (UMN172F)_F12_BE443995Ld09P166G03P166H061F1_086.ab1   321 
  329  C (UMN172R)_F12_BE443995Ld09P166G03P166H061R1_086.ab1   600 
  337    (UMN172F)_F12_BE443995Ld09P166G03P166H061F1_086.ab1   337 
  361  C (UMN172R)_F12_BE443995Ld09P166G03P166H061R1_086.ab1   568 
Contig length: old 928, new 928

Contig length: old 928, new 928
New start: 0