No. words: 1655; after pruning: 1629


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:983)  643  0.30 0.15 0.15  (UMN172F)_G12_BE443995Ld10P166G03P166H061F1_084.ab1      102   772 (0)  C (UMN172R)_G12_BE443995Ld10P166G03P166H061R1_084.ab1   (0)   883   213 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1    (UMN172F)_G12_BE443995Ld10P166G03P166H061F1_084.ab1     1 
  388  C (UMN172R)_G12_BE443995Ld10P166G03P166H061R1_084.ab1   597 
  392    (UMN172F)_G12_BE443995Ld10P166G03P166H061F1_084.ab1   392 
  416  C (UMN172R)_G12_BE443995Ld10P166G03P166H061R1_084.ab1   569 
  500    (UMN172F)_G12_BE443995Ld10P166G03P166H061F1_084.ab1   500 
  512  C (UMN172R)_G12_BE443995Ld10P166G03P166H061R1_084.ab1   473 
Contig length: old 984, new 984

Contig length: old 984, new 984
New start: 0