No. words: 1693; after pruning: 1667


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.2 (1,1:975)  695  0.42 0.00 0.00  (UMN171F)_G04_BE443995Tu01P166G03P166H061F1_020.ab1       79   795 (0)  C (UMN171R)_G04_BE443995Tu01P166G03P166H061R1_020.ab1   (0)   898   182 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1    (UMN171F)_G04_BE443995Tu01P166G03P166H061F1_020.ab1     1 
  303  C (UMN171R)_G04_BE443995Tu01P166G03P166H061R1_020.ab1   674 
  323    (UMN171F)_G04_BE443995Tu01P166G03P166H061F1_020.ab1   323 
  335  C (UMN171R)_G04_BE443995Tu01P166G03P166H061R1_020.ab1   642 
  383    (UMN171F)_G04_BE443995Tu01P166G03P166H061F1_020.ab1   383 
  395  C (UMN171R)_G04_BE443995Tu01P166G03P166H061R1_020.ab1   582 
Contig length: old 976, new 976

Contig length: old 976, new 976
New start: 0