No. words: 1818; after pruning: 1778


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:993)  806  0.12 0.00 0.12  (UMN171F)_H04_BE443995Tu02P166G03P166H061F1_018.ab1       68   891 (0)  C (UMN171R)_H04_BE443995Tu02P166G03P166H061R1_018.ab1   (0)   927   105 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1    (UMN171F)_H04_BE443995Tu02P166G03P166H061F1_018.ab1     1 
  612  C (UMN171R)_H04_BE443995Tu02P166G03P166H061R1_018.ab1   384 
Contig length: old 994, new 995

Contig length: old 995, new 995
New start: 0