No. words: 1024; after pruning: 998


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:465)  444  0.64 0.00 0.21  (UMN171F)_D12_BE445496As01P176A01P176A041F1_090.ab1        1   466 (49)  C (UMN171R)_D12_BE445496As01P176A01P176A041R1_090.ab1   (44)   465     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C (UMN171R)_D12_BE445496As01P176A01P176A041R1_090.ab1   509 
  144    (UMN171F)_D12_BE445496As01P176A01P176A041F1_090.ab1   100 
  152  C (UMN171R)_D12_BE445496As01P176A01P176A041R1_090.ab1   358 
  204    (UMN171F)_D12_BE445496As01P176A01P176A041F1_090.ab1   160 
Contig length: old 558, new 559

Contig length: old 559, new 559
New start: 0