No. words: 1006; after pruning: 980 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 9.8 (1,1:458) 443 0.65 0.00 0.00 (UMN171F)_F12_BE445496At01P176A01P176A041F1_086.ab1 1 459 (42) C (UMN171R)_F12_BE445496At01P176A01P176A041R1_086.ab1 (46) 459 1 * Pass: 3 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 0 1 0 Offset 0 1 Pass 4 Gap Score Pass: 4 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Read equivalence class histogram: 2 1 Chimera merges: Contig 1: 218 nodes 111 str. conn. components Path 1 C (UMN171R)_F12_BE445496At01P176A01P176A041R1_086.ab1 505 144 (UMN171F)_F12_BE445496At01P176A01P176A041F1_086.ab1 98 152 C (UMN171R)_F12_BE445496At01P176A01P176A041R1_086.ab1 354 208 (UMN171F)_F12_BE445496At01P176A01P176A041F1_086.ab1 162 244 C (UMN171R)_F12_BE445496At01P176A01P176A041R1_086.ab1 262 268 (UMN171F)_F12_BE445496At01P176A01P176A041F1_086.ab1 222 276 C (UMN171R)_F12_BE445496At01P176A01P176A041R1_086.ab1 230 284 (UMN171F)_F12_BE445496At01P176A01P176A041F1_086.ab1 238 348 C (UMN171R)_F12_BE445496At01P176A01P176A041R1_086.ab1 158 352 (UMN171F)_F12_BE445496At01P176A01P176A041F1_086.ab1 306 448 C (UMN171R)_F12_BE445496At01P176A01P176A041R1_086.ab1 58 452 (UMN171F)_F12_BE445496At01P176A01P176A041F1_086.ab1 406 Contig length: old 547, new 547 Contig length: old 547, new 547 New start: 0