No. words: 1256; after pruning: 1230


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.4 (1,1:473)  446  0.63 0.00 0.42  (UMN173F)_H02_BE445496Ld02P176A01P176A041F1_002.ab1        2   475 (173)  C (UMN173R)_H02_BE445496Ld02P176A01P176A041R1_002.ab1   (136)   472     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C (UMN173R)_H02_BE445496Ld02P176A01P176A041R1_002.ab1   608 
  244    (UMN173F)_H02_BE445496Ld02P176A01P176A041F1_002.ab1   109 
  292  C (UMN173R)_H02_BE445496Ld02P176A01P176A041R1_002.ab1   317 
  296    (UMN173F)_H02_BE445496Ld02P176A01P176A041F1_002.ab1   161 
  556  C (UMN173R)_H02_BE445496Ld02P176A01P176A041R1_002.ab1    53 
  564    (UMN173F)_H02_BE445496Ld02P176A01P176A041F1_002.ab1   429 
Contig length: old 782, new 783

Contig length: old 783, new 783
New start: 0