No. words: 1244; after pruning: 1218


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:463)  452  0.00 0.00 0.22  (UMN173F)_B03_BE445496Ld04P176A01P176A041F1_029.ab1        1   464 (171)  C (UMN173R)_B03_BE445496Ld04P176A01P176A041R1_029.ab1   (146)   463     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C (UMN173R)_B03_BE445496Ld04P176A01P176A041R1_029.ab1   609 
  206    (UMN173F)_B03_BE445496Ld04P176A01P176A041F1_029.ab1    60 
  222  C (UMN173R)_B03_BE445496Ld04P176A01P176A041R1_029.ab1   388 
  242    (UMN173F)_B03_BE445496Ld04P176A01P176A041F1_029.ab1    96 
  250  C (UMN173R)_B03_BE445496Ld04P176A01P176A041R1_029.ab1   360 
  286    (UMN173F)_B03_BE445496Ld04P176A01P176A041F1_029.ab1   140 
Contig length: old 780, new 781

Contig length: old 781, new 781
New start: 0