No. words: 1066; after pruning: 1040


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:476)  443  1.26 0.21 0.21  (UMN171F)_B12_BE445496Tu01P176A01P176A041F1_094.ab1        1   477 (57)  C (UMN171R)_B12_BE445496Tu01P176A01P176A041R1_094.ab1   (55)   477     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C (UMN171R)_B12_BE445496Tu01P176A01P176A041R1_094.ab1   532 
  228    (UMN171F)_B12_BE445496Tu01P176A01P176A041F1_094.ab1   172 
  252  C (UMN171R)_B12_BE445496Tu01P176A01P176A041R1_094.ab1   281 
  336    (UMN171F)_B12_BE445496Tu01P176A01P176A041F1_094.ab1   280 
  360  C (UMN171R)_B12_BE445496Tu01P176A01P176A041R1_094.ab1   173 
  388    (UMN171F)_B12_BE445496Tu01P176A01P176A041F1_094.ab1   332 
  392  C (UMN171R)_B12_BE445496Tu01P176A01P176A041R1_094.ab1   141 
  424    (UMN171F)_B12_BE445496Tu01P176A01P176A041F1_094.ab1   368 
  428  C (UMN171R)_B12_BE445496Tu01P176A01P176A041R1_094.ab1   105 
  488    (UMN171F)_B12_BE445496Tu01P176A01P176A041F1_094.ab1   432 
Contig length: old 589, new 590

Contig length: old 590, new 590
New start: 0