No. words: 1451; after pruning: 1425


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 10.7 (1,1:686)  659  0.73 0.00 0.15  (UMN172F)_C01_BE489274As01P176C01P176D041F1_011.ab1        1   682 (38)  C (UMN172R)_C01_BE489274As01P176C01P176D041R1_011.ab1   (45)   686     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C (UMN172R)_C01_BE489274As01P176C01P176D041R1_011.ab1   731 
   57    (UMN172F)_C01_BE489274As01P176C01P176D041F1_011.ab1    12 
   61  C (UMN172R)_C01_BE489274As01P176C01P176D041R1_011.ab1   671 
  445    (UMN172F)_C01_BE489274As01P176C01P176D041F1_011.ab1   400 
  453  C (UMN172R)_C01_BE489274As01P176C01P176D041R1_011.ab1   279 
  573    (UMN172F)_C01_BE489274As01P176C01P176D041F1_011.ab1   528 
  581  C (UMN172R)_C01_BE489274As01P176C01P176D041R1_011.ab1   151 
  633    (UMN172F)_C01_BE489274As01P176C01P176D041F1_011.ab1   588 
  637  C (UMN172R)_C01_BE489274As01P176C01P176D041R1_011.ab1    95 
  685    (UMN172F)_C01_BE489274As01P176C01P176D041F1_011.ab1   640 
  689  C (UMN172R)_C01_BE489274As01P176C01P176D041R1_011.ab1    43 
  715    (UMN172F)_C01_BE489274As01P176C01P176D041F1_011.ab1   671 
Contig length: old 764, new 764

Contig length: old 764, new 765
New start: 0 
I Change at: 709; seg lengths: entry 1, contig 0