No. words: 1457; after pruning: 1431


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:690)  667  0.29 0.14 0.29  (UMN172F)_E01_BE489274At01P176C01P176D041F1_007.ab1        1   691 (39)  C (UMN172R)_E01_BE489274At01P176C01P176D041R1_007.ab1   (36)   691     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C (UMN172R)_E01_BE489274At01P176C01P176D041R1_007.ab1   727 
  570    (UMN172F)_E01_BE489274At01P176C01P176D041F1_007.ab1   533 
  594  C (UMN172R)_E01_BE489274At01P176C01P176D041R1_007.ab1   134 
  602    (UMN172F)_E01_BE489274At01P176C01P176D041F1_007.ab1   565 
  638  C (UMN172R)_E01_BE489274At01P176C01P176D041R1_007.ab1    90 
  670    (UMN172F)_E01_BE489274At01P176C01P176D041F1_007.ab1   633 
  686  C (UMN172R)_E01_BE489274At01P176C01P176D041R1_007.ab1    42 
  702    (UMN172F)_E01_BE489274At01P176C01P176D041F1_007.ab1   665 
Contig length: old 766, new 767

Contig length: old 767, new 767
New start: 0