No. words: 1457; after pruning: 1431


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.5 (1,1:690)  652  1.02 0.29 0.15  (UMN172F)_F01_BE489274At02P176C01P176D041F1_005.ab1        1   689 (38)  C (UMN172R)_F01_BE489274At02P176C01P176D041R1_005.ab1   (38)   692     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C (UMN172R)_F01_BE489274At02P176C01P176D041R1_005.ab1   730 
   59    (UMN172F)_F01_BE489274At02P176C01P176D041F1_005.ab1    19 
   67  C (UMN172R)_F01_BE489274At02P176C01P176D041R1_005.ab1   664 
  267    (UMN172F)_F01_BE489274At02P176C01P176D041F1_005.ab1   227 
  271  C (UMN172R)_F01_BE489274At02P176C01P176D041R1_005.ab1   460 
  363    (UMN172F)_F01_BE489274At02P176C01P176D041F1_005.ab1   323 
  383  C (UMN172R)_F01_BE489274At02P176C01P176D041R1_005.ab1   348 
  603    (UMN172F)_F01_BE489274At02P176C01P176D041F1_005.ab1   563 
  611  C (UMN172R)_F01_BE489274At02P176C01P176D041R1_005.ab1   120 
  627    (UMN172F)_F01_BE489274At02P176C01P176D041F1_005.ab1   587 
  659  C (UMN172R)_F01_BE489274At02P176C01P176D041R1_005.ab1    72 
  667    (UMN172F)_F01_BE489274At02P176C01P176D041F1_005.ab1   627 
  691  C (UMN172R)_F01_BE489274At02P176C01P176D041R1_005.ab1    40 
  703    (UMN172F)_F01_BE489274At02P176C01P176D041F1_005.ab1   663 
  714  C (UMN172R)_F01_BE489274At02P176C01P176D041R1_005.ab1    18 
  718    (UMN172F)_F01_BE489274At02P176C01P176D041F1_005.ab1   678 
Contig length: old 766, new 767

Contig length: old 767, new 767
New start: 0