No. words: 1671; after pruning: 1645


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:822)  781  0.86 0.00 0.12  (UMN173F)_E03_BE489274Ld01P176C01P176D041F1_023.ab1        7   823 (31)  C (UMN173R)_E03_BE489274Ld01P176C01P176D041R1_023.ab1   (0)   817     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1    (UMN173F)_E03_BE489274Ld01P176C01P176D041F1_023.ab1     1 
   30  C (UMN173R)_E03_BE489274Ld01P176C01P176D041R1_023.ab1   794 
   42    (UMN173F)_E03_BE489274Ld01P176C01P176D041F1_023.ab1    42 
   70  C (UMN173R)_E03_BE489274Ld01P176C01P176D041R1_023.ab1   754 
   83    (UMN173F)_E03_BE489274Ld01P176C01P176D041F1_023.ab1    83 
  111  C (UMN173R)_E03_BE489274Ld01P176C01P176D041R1_023.ab1   713 
  815    (UMN173F)_E03_BE489274Ld01P176C01P176D041F1_023.ab1   816 
Contig length: old 854, new 853

Contig length: old 853, new 853
New start: 0 
S Change at: 819; seg lengths: entry 1, contig 1