No. words: 1691; after pruning: 1665


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:840)  770  0.63 0.13 0.00  (UMN173F)_G03_BE489274Ld03P176C01P176D041F1_019.ab1        1   799 (0)  C (UMN173R)_G03_BE489274Ld03P176C01P176D041R1_019.ab1   (50)   842    43 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C (UMN173R)_G03_BE489274Ld03P176C01P176D041R1_019.ab1   892 
   61    (UMN173F)_G03_BE489274Ld03P176C01P176D041F1_019.ab1    10 
  177  C (UMN173R)_G03_BE489274Ld03P176C01P176D041R1_019.ab1   716 
  838    (UMN173F)_G03_BE489274Ld03P176C01P176D041F1_019.ab1   787 
  842  C (UMN173R)_G03_BE489274Ld03P176C01P176D041R1_019.ab1    51 
Contig length: old 892, new 892

Contig length: old 892, new 892
New start: 0 
S Change at: 98; seg lengths: entry 1, contig 1