No. words: 1691; after pruning: 1665


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.5 (1,1:1442)  236  0.00 0.00 0.00  (UMN172F)_B01_BE489274Tu02P176C01P176D041F1_013.ab1      588   835 (0)  C (UMN172R)_B01_BE489274Tu02P176C01P176D041R1_013.ab1   (0)   856   609 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  126 nodes

 65 str. conn. components

Path
    1    (UMN172F)_B01_BE489274Tu02P176C01P176D041F1_013.ab1     1 
  640  C (UMN172R)_B01_BE489274Tu02P176C01P176D041R1_013.ab1   804 
  648    (UMN172F)_B01_BE489274Tu02P176C01P176D041F1_013.ab1   648 
  684  C (UMN172R)_B01_BE489274Tu02P176C01P176D041R1_013.ab1   760 
  696    (UMN172F)_B01_BE489274Tu02P176C01P176D041F1_013.ab1   696 
  704  C (UMN172R)_B01_BE489274Tu02P176C01P176D041R1_013.ab1   740 
Contig length: old 1443, new 1443

Contig length: old 1443, new 1443
New start: 0