No. words: 1294; after pruning: 1268


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:604)  587  0.17 0.17 0.00  (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1        1   605 (40)  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   (43)   606     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   649 
  137    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1    93 
  177  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   473 
  185    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   141 
  189  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   461 
  229    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   185 
  293  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   357 
  317    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   273 
  325  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   325 
  337    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   293 
  341  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   309 
  345    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   301 
  357  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   293 
  361    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   317 
  401  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   249 
  409    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   365 
  425  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   225 
  433    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   389 
  445  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   205 
  469    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   425 
  497  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   153 
  517    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   473 
  521  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   129 
  537    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   493 
  541  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1   109 
  557    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   513 
  561  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1    89 
  569    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   525 
  577  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1    73 
  581    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   537 
  585  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1    65 
  593    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   549 
  609  C (UMN172R)_A02_BE490700As01P176G01P176G041R1_016.ab1    41 
  617    (UMN172F)_A02_BE490700As01P176G01P176G041F1_016.ab1   573 
Contig length: old 689, new 689

Contig length: old 689, new 689
New start: 0