No. words: 1287; after pruning: 1261


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:603)  589  0.00 0.17 0.00  (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1        1   604 (37)  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   (41)   605     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   646 
  107    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1    65 
  111  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   536 
  371    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   329 
  387  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   260 
  407    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   365 
  423  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   224 
  439    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   397 
  443  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   204 
  487    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   445 
  491  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   156 
  499    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   457 
  511  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   136 
  515    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   473 
  519  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   128 
  535    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   493 
  539  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1   108 
  551    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   509 
  555  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1    92 
  579    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   537 
  583  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1    64 
  595    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   553 
  607  C (UMN172R)_B02_BE490700As02P176G01P176G041R1_014.ab1    40 
  615    (UMN172F)_B02_BE490700As02P176G01P176G041F1_014.ab1   573 
Contig length: old 683, new 683

Contig length: old 683, new 683
New start: 0