No. words: 1521; after pruning: 1495


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:608)  592  0.16 0.16 0.00  (UMN173F)_H03_BE490700Ld01P176G01P176G041F1_017.ab1        1   609 (163)  C (UMN173R)_H03_BE490700Ld01P176G01P176G041R1_017.ab1   (139)   610     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C (UMN173R)_H03_BE490700Ld01P176G01P176G041R1_017.ab1   749 
  262    (UMN173F)_H03_BE490700Ld01P176G01P176G041F1_017.ab1   122 
  286  C (UMN173R)_H03_BE490700Ld01P176G01P176G041R1_017.ab1   464 
  290    (UMN173F)_H03_BE490700Ld01P176G01P176G041F1_017.ab1   150 
  310  C (UMN173R)_H03_BE490700Ld01P176G01P176G041R1_017.ab1   440 
  322    (UMN173F)_H03_BE490700Ld01P176G01P176G041F1_017.ab1   182 
  458  C (UMN173R)_H03_BE490700Ld01P176G01P176G041R1_017.ab1   292 
  482    (UMN173F)_H03_BE490700Ld01P176G01P176G041F1_017.ab1   342 
  574  C (UMN173R)_H03_BE490700Ld01P176G01P176G041R1_017.ab1   176 
  614    (UMN173F)_H03_BE490700Ld01P176G01P176G041F1_017.ab1   474 
Contig length: old 912, new 912

Contig length: old 912, new 912
New start: 0