No. words: 1457; after pruning: 1431


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:569)  556  0.00 0.18 0.00  (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1        1   570 (176)  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   (140)   571     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   711 
  162    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1    21 
  166  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   546 
  198    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1    57 
  206  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   506 
  214    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1    73 
  222  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   490 
  238    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1    97 
  254  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   458 
  262    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1   121 
  298  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   414 
  322    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1   181 
  334  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   378 
  366    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1   225 
  410  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   302 
  418    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1   277 
  430  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   282 
  438    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1   297 
  446  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1   266 
  450    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1   309 
  626  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1    86 
  642    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1   501 
  654  C (UMN173R)_C04_BE490700Ld04P176G01P176G041R1_028.ab1    58 
  662    (UMN173F)_C04_BE490700Ld04P176G01P176G041F1_028.ab1   521 
Contig length: old 887, new 887

Contig length: old 887, new 887
New start: 0