No. words: 1453; after pruning: 1427


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:573)  555  0.00 0.35 0.00  (UMN173F)_F04_BE490700Ld07P176G01P176G041F1_022.ab1        1   573 (162)  C (UMN173R)_F04_BE490700Ld07P176G01P176G041R1_022.ab1   (143)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C (UMN173R)_F04_BE490700Ld07P176G01P176G041R1_022.ab1   718 
  290    (UMN173F)_F04_BE490700Ld07P176G01P176G041F1_022.ab1   145 
  310  C (UMN173R)_F04_BE490700Ld07P176G01P176G041R1_022.ab1   409 
  322    (UMN173F)_F04_BE490700Ld07P176G01P176G041F1_022.ab1   177 
  338  C (UMN173R)_F04_BE490700Ld07P176G01P176G041R1_022.ab1   381 
  386    (UMN173F)_F04_BE490700Ld07P176G01P176G041F1_022.ab1   241 
  542  C (UMN173R)_F04_BE490700Ld07P176G01P176G041R1_022.ab1   177 
  558    (UMN173F)_F04_BE490700Ld07P176G01P176G041F1_022.ab1   413 
Contig length: old 879, new 880

Contig length: old 880, new 880
New start: 0