No. words: 1527; after pruning: 1501


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:612)  592  0.00 0.33 0.00  (UMN173F)_B05_BE490700Ld11P176G01P176G041F1_045.ab1        2   612 (164)  C (UMN173R)_B05_BE490700Ld11P176G01P176G041R1_045.ab1   (138)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C (UMN173R)_B05_BE490700Ld11P176G01P176G041R1_045.ab1   751 
  327    (UMN173F)_B05_BE490700Ld11P176G01P176G041F1_045.ab1   188 
  459  C (UMN173R)_B05_BE490700Ld11P176G01P176G041R1_045.ab1   293 
  483    (UMN173F)_B05_BE490700Ld11P176G01P176G041F1_045.ab1   344 
  675  C (UMN173R)_B05_BE490700Ld11P176G01P176G041R1_045.ab1    77 
  679    (UMN173F)_B05_BE490700Ld11P176G01P176G041F1_045.ab1   540 
  687  C (UMN173R)_B05_BE490700Ld11P176G01P176G041R1_045.ab1    65 
  695    (UMN173F)_B05_BE490700Ld11P176G01P176G041F1_045.ab1   556 
Contig length: old 914, new 915

Contig length: old 915, new 915
New start: 0