No. words: 1290; after pruning: 1264


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:603)  586  0.17 0.17 0.00  (UMN172F)_G01_BE490700Tu01P176G01P176G041F1_003.ab1        1   604 (40)  C (UMN172R)_G01_BE490700Tu01P176G01P176G041R1_003.ab1   (41)   605     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C (UMN172R)_G01_BE490700Tu01P176G01P176G041R1_003.ab1   646 
  562    (UMN172F)_G01_BE490700Tu01P176G01P176G041F1_003.ab1   520 
  570  C (UMN172R)_G01_BE490700Tu01P176G01P176G041R1_003.ab1    77 
  578    (UMN172F)_G01_BE490700Tu01P176G01P176G041F1_003.ab1   536 
  582  C (UMN172R)_G01_BE490700Tu01P176G01P176G041R1_003.ab1    65 
  602    (UMN172F)_G01_BE490700Tu01P176G01P176G041F1_003.ab1   560 
  606  C (UMN172R)_G01_BE490700Tu01P176G01P176G041R1_003.ab1    41 
  614    (UMN172F)_G01_BE490700Tu01P176G01P176G041F1_003.ab1   572 
Contig length: old 686, new 686

Contig length: old 686, new 686
New start: 0