No. words: 1512; after pruning: 1486


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:714)  682  0.56 0.00 0.14  (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1        1   715 (44)  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   (39)   714     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  344 nodes

 174 str. conn. components

Path
    1  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   753 
   47    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1     8 
   51  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   703 
   55    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1    16 
   79  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   675 
  109    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1    70 
  125  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   629 
  141    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   102 
  153  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   601 
  161    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   122 
  173  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   581 
  249    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   210 
  385  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   369 
  473    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   434 
  481  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   273 
  509    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   470 
  533  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   221 
  581    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   542 
  601  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1   153 
  653    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   614 
  661  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1    93 
  665    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   626 
  673  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1    81 
  705    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   666 
  728  C (UMN172R)_G02_BE497469As01P176H01P176H041R1_004.ab1    26 
  732    (UMN172F)_G02_BE497469As01P176H01P176H041F1_004.ab1   693 
Contig length: old 797, new 798

Contig length: old 798, new 798
New start: 0