No. words: 1496; after pruning: 1470


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:692)  647  1.15 0.00 0.14  (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1        1   693 (68)  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   (43)   692     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   735 
   63    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1    20 
   79  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   657 
  104    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1    61 
  124  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   612 
  148    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   105 
  168  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   568 
  172    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   129 
  180  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   556 
  192    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   149 
  200  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   536 
  212    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   169 
  232  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   504 
  236    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   193 
  240  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   496 
  248    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   205 
  360  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   376 
  372    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   329 
  376  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   360 
  380    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   337 
  416  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   320 
  428    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   385 
  456  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   280 
  468    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   425 
  476  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   260 
  480    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   437 
  592  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   144 
  596    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   553 
  600  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   136 
  604    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   561 
  620  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   116 
  628    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   585 
  636  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1   100 
  644    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   601 
  652  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1    84 
  656    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   613 
  684  C (UMN172R)_H02_BE497469As02P176H01P176H041R1_002.ab1    52 
  688    (UMN172F)_H02_BE497469As02P176H01P176H041F1_002.ab1   645 
Contig length: old 803, new 804

Contig length: old 804, new 804
New start: 0