No. words: 1526; after pruning: 1500


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.3 (1,1:721)  696  0.42 0.00 0.00  (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1        1   721 (44)  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   (39)   722     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   761 
   47    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1     8 
   51  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   711 
   55    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1    16 
   79  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   683 
  105    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1    66 
  125  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   637 
  137    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1    98 
  149  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   613 
  161    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   122 
  169  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   593 
  173    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   134 
  181  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   581 
  253    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   214 
  265  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   497 
  273    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   234 
  289  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   473 
  325    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   286 
  337  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   425 
  469    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   430 
  477  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   285 
  509    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   470 
  545  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   217 
  629    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   590 
  633  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   129 
  657    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   618 
  661  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1   101 
  713    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   674 
  721  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1    41 
  733    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   694 
  737  C (UMN172R)_A03_BE497469At01P176H01P176H041R1_031.ab1    25 
  745    (UMN172F)_A03_BE497469At01P176H01P176H041F1_031.ab1   706 
Contig length: old 804, new 804

Contig length: old 804, new 804
New start: 0