No. words: 1519; after pruning: 1493


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:719)  694  0.42 0.00 0.00  (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1        1   720 (41)  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   (38)   720     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   758 
   46    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1     8 
   50  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   709 
   54    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1    16 
   78  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   681 
  104    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1    66 
  112  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   647 
  116    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1    78 
  124  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   635 
  156    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1   118 
  176  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   583 
  316    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1   278 
  420  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   339 
  468    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1   430 
  556  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   203 
  628    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1   590 
  644  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1   115 
  652    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1   614 
  668  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1    91 
  672    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1   634 
  676  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1    83 
  712    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1   674 
  720  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1    39 
  732    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1   694 
  740  C (UMN172R)_B03_BE497469At02P176H01P176H041R1_029.ab1    19 
  748    (UMN172F)_B03_BE497469At02P176H01P176H041F1_029.ab1   710 
Contig length: old 799, new 799

Contig length: old 799, new 799
New start: 0