No. words: 1743; after pruning: 1717


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 13.5 (1,1:725)  701  0.14 0.00 0.00  (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1        1   719 (137)  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   (161)   726     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   887 
  185    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1    24 
  205  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   683 
  217    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1    56 
  253  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   635 
  289    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   128 
  301  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   587 
  397    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   236 
  409  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   479 
  473    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   312 
  493  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   395 
  513    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   352 
  577  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   311 
  585    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   424 
  613  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   275 
  617    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   456 
  621  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   267 
  745    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   584 
  777  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1   111 
  785    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   624 
  789  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1    99 
  809    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   648 
  821  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1    67 
  825    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   664 
  841  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1    47 
  845    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   684 
  853  C (UMN173R)_D05_BE497469Ld01P176H01P176H041R1_041.ab1    35 
  861    (UMN173F)_D05_BE497469Ld01P176H01P176H041F1_041.ab1   700 
Contig length: old 1017, new 1017

Contig length: old 1017, new 1017
New start: 0