No. words: 1723; after pruning: 1697


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.1 (1,1:715)  691  0.42 0.00 0.00  (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1        2   716 (164)  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   (128)   715     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   843 
  140    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1    13 
  144  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   700 
  156    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1    29 
  176  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   668 
  192    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1    65 
  212  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   632 
  276    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   149 
  296  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   548 
  300    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   173 
  324  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   520 
  344    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   217 
  356  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   488 
  364    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   237 
  376  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   468 
  412    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   285 
  428  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   416 
  440    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   313 
  464  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   380 
  476    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   349 
  504  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   340 
  524    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   397 
  528  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   316 
  552    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   425 
  584  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   260 
  592    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   465 
  632  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   212 
  656    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   529 
  720  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1   124 
  740    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   613 
  784  C (UMN173R)_F05_BE497469Ld03P176H01P176H041R1_037.ab1    60 
  788    (UMN173F)_F05_BE497469Ld03P176H01P176H041F1_037.ab1   661 
Contig length: old 1007, new 1007

Contig length: old 1007, new 1007
New start: 0