No. words: 1739; after pruning: 1699


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 14.8 (1,1:721)  694  0.00 0.14 0.00  (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1        1   712 (144)  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   (160)   723    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   883 
  182    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1    21 
  206  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   678 
  214    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1    53 
  258  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   626 
  266    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   105 
  302  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   582 
  446    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   285 
  454  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   430 
  474    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   313 
  494  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   390 
  502    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   341 
  534  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   350 
  586    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   425 
  610  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   274 
  710    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   549 
  746  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1   138 
  762    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   601 
  790  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1    94 
  810    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   649 
  834  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1    50 
  846    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   685 
  854  C (UMN173R)_G05_BE497469Ld04P176H01P176H041R1_035.ab1    30 
  862    (UMN173F)_G05_BE497469Ld04P176H01P176H041F1_035.ab1   701 
Contig length: old 1017, new 1017

Contig length: old 1017, new 1017
New start: 0 
S Change at: 947; seg lengths: entry 1, contig 1