No. words: 1738; after pruning: 1712


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 15.0 (1,1:722)  699  0.00 0.00 0.00  (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1        1   713 (143)  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   (159)   723    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   882 
  180    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1    21 
  208  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   675 
  216    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1    57 
  252  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   631 
  276    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   117 
  296  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   587 
  428    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   269 
  456  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   427 
  472    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   313 
  492  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   391 
  500    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   341 
  508  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   375 
  512    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   353 
  532  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   351 
  584    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   425 
  612  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   271 
  676    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   517 
  692  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   191 
  708    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   549 
  780  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1   103 
  784    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   625 
  788  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1    95 
  804    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   645 
  808  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1    75 
  824    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   665 
  836  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1    47 
  848    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   689 
  856  C (UMN173R)_A06_BE497469Ld06P176H01P176H041R1_048.ab1    27 
  860    (UMN173F)_A06_BE497469Ld06P176H01P176H041F1_048.ab1   701 
Contig length: old 1015, new 1015

Contig length: old 1015, new 1015
New start: 0