No. words: 1728; after pruning: 1702


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:710)  687  0.28 0.14 0.00  (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1        1   711 (144)  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1   (161)   712     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1   873 
  185    (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1    23 
  205  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1   669 
  218    (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1    56 
  254  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1   620 
  354    (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1   192 
  458  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1   416 
  474    (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1   312 
  490  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1   384 
  514    (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1   352 
  542  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1   332 
  586    (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1   424 
  614  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1   260 
  710    (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1   548 
  790  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1    84 
  814    (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1   652 
  842  C (UMN173R)_C06_BE497469Ld08P176H01P176H041R1_044.ab1    32 
  846    (UMN173F)_C06_BE497469Ld08P176H01P176H041F1_044.ab1   684 
Contig length: old 1017, new 1017

Contig length: old 1017, new 1017
New start: 0