No. words: 1502; after pruning: 1476


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:711)  667  0.98 0.14 0.14  (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1        1   712 (40)  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   (38)   712     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   750 
   46    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1     8 
   50  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   701 
   58    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1    20 
   70  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   681 
   74    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1    36 
   78  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   673 
  108    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1    69 
  120  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   631 
  149    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   110 
  177  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   574 
  189    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   150 
  197  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   554 
  225    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   186 
  237  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   514 
  245    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   206 
  353  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   398 
  381    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   342 
  413  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   338 
  433    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   394 
  453  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   298 
  577    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   538 
  593  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   158 
  605    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   566 
  613  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   138 
  621    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   582 
  625  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1   126 
  637    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   598 
  673  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1    78 
  677    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   638 
  721  C (UMN172R)_F02_BE497469Tu02P176H01P176H041R1_006.ab1    30 
  725    (UMN172F)_F02_BE497469Tu02P176H01P176H041F1_006.ab1   686 
Contig length: old 790, new 791

Contig length: old 791, new 791
New start: 0