No. words: 1406; after pruning: 1366


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:661)  618  1.36 0.30 0.15  (UMN172F)_E03_BE497784As01P176C02P176D051F1_023.ab1        1   662 (37)  C (UMN172R)_E03_BE497784As01P176C02P176D051R1_023.ab1   (44)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C (UMN172R)_E03_BE497784As01P176C02P176D051R1_023.ab1   707 
  400    (UMN172F)_E03_BE497784As01P176C02P176D051F1_023.ab1   354 
  452  C (UMN172R)_E03_BE497784As01P176C02P176D051R1_023.ab1   256 
  484    (UMN172F)_E03_BE497784As01P176C02P176D051F1_023.ab1   438 
  544  C (UMN172R)_E03_BE497784As01P176C02P176D051R1_023.ab1   164 
  568    (UMN172F)_E03_BE497784As01P176C02P176D051F1_023.ab1   522 
  592  C (UMN172R)_E03_BE497784As01P176C02P176D051R1_023.ab1   116 
  596    (UMN172F)_E03_BE497784As01P176C02P176D051F1_023.ab1   550 
  675  C (UMN172R)_E03_BE497784As01P176C02P176D051R1_023.ab1    33 
  690    (UMN172F)_E03_BE497784As01P176C02P176D051F1_023.ab1   644 
Contig length: old 744, new 745

Contig length: old 745, new 745
New start: 0