No. words: 1397; after pruning: 1371


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:647)  610  1.39 0.00 0.15  (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1        1   648 (40)  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1   (62)   647     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1   709 
   66    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1     4 
   70  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1   640 
  220    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1   158 
  248  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1   462 
  276    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1   214 
  300  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1   410 
  348    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1   286 
  380  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1   330 
  384    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1   322 
  456  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1   254 
  484    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1   422 
  496  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1   214 
  500    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1   438 
  548  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1   162 
  584    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1   522 
  669  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1    41 
  673    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1   611 
  685  C (UMN172R)_F03_BE497784As02P176C02P176D051R1_021.ab1    25 
  689    (UMN172F)_F03_BE497784As02P176C02P176D051F1_021.ab1   627 
Contig length: old 749, new 750

Contig length: old 750, new 750
New start: 0