No. words: 1424; after pruning: 1398


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:669)  640  0.60 0.15 0.30  (UMN172F)_G03_BE497784At01P176C02P176D051F1_019.ab1        1   671 (32)  C (UMN172R)_G03_BE497784At01P176C02P176D051R1_019.ab1   (51)   670     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C (UMN172R)_G03_BE497784At01P176C02P176D051R1_019.ab1   721 
   76    (UMN172F)_G03_BE497784At01P176C02P176D051F1_019.ab1    24 
   80  C (UMN172R)_G03_BE497784At01P176C02P176D051R1_019.ab1   642 
   84    (UMN172F)_G03_BE497784At01P176C02P176D051F1_019.ab1    32 
   92  C (UMN172R)_G03_BE497784At01P176C02P176D051R1_019.ab1   630 
   96    (UMN172F)_G03_BE497784At01P176C02P176D051F1_019.ab1    44 
  104  C (UMN172R)_G03_BE497784At01P176C02P176D051R1_019.ab1   618 
  116    (UMN172F)_G03_BE497784At01P176C02P176D051F1_019.ab1    64 
  124  C (UMN172R)_G03_BE497784At01P176C02P176D051R1_019.ab1   598 
  232    (UMN172F)_G03_BE497784At01P176C02P176D051F1_019.ab1   180 
  460  C (UMN172R)_G03_BE497784At01P176C02P176D051R1_019.ab1   262 
  512    (UMN172F)_G03_BE497784At01P176C02P176D051F1_019.ab1   460 
  677  C (UMN172R)_G03_BE497784At01P176C02P176D051R1_019.ab1    45 
  681    (UMN172F)_G03_BE497784At01P176C02P176D051F1_019.ab1   629 
  685  C (UMN172R)_G03_BE497784At01P176C02P176D051R1_019.ab1    37 
  689    (UMN172F)_G03_BE497784At01P176C02P176D051F1_019.ab1   637 
Contig length: old 754, new 755

Contig length: old 755, new 755
New start: 0