No. words: 1623; after pruning: 1597


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:663)  636  0.75 0.00 0.30  (UMN173F)_D06_BE497784Ld01P176C02P176D051F1_042.ab1        1   665 (127)  C (UMN173R)_D06_BE497784Ld01P176C02P176D051R1_042.ab1   (168)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C (UMN173R)_D06_BE497784Ld01P176C02P176D051R1_042.ab1   831 
  243    (UMN173F)_D06_BE497784Ld01P176C02P176D051F1_042.ab1    75 
  251  C (UMN173R)_D06_BE497784Ld01P176C02P176D051R1_042.ab1   581 
  319    (UMN173F)_D06_BE497784Ld01P176C02P176D051F1_042.ab1   151 
  363  C (UMN173R)_D06_BE497784Ld01P176C02P176D051R1_042.ab1   469 
  387    (UMN173F)_D06_BE497784Ld01P176C02P176D051F1_042.ab1   219 
  403  C (UMN173R)_D06_BE497784Ld01P176C02P176D051R1_042.ab1   429 
  431    (UMN173F)_D06_BE497784Ld01P176C02P176D051F1_042.ab1   263 
  471  C (UMN173R)_D06_BE497784Ld01P176C02P176D051R1_042.ab1   361 
  527    (UMN173F)_D06_BE497784Ld01P176C02P176D051F1_042.ab1   359 
  591  C (UMN173R)_D06_BE497784Ld01P176C02P176D051R1_042.ab1   241 
  615    (UMN173F)_D06_BE497784Ld01P176C02P176D051F1_042.ab1   447 
  663  C (UMN173R)_D06_BE497784Ld01P176C02P176D051R1_042.ab1   169 
  687    (UMN173F)_D06_BE497784Ld01P176C02P176D051F1_042.ab1   519 
Contig length: old 959, new 960

Contig length: old 960, new 960
New start: 0