No. words: 1615; after pruning: 1589


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.8 (1,1:654)  634  0.31 0.00 0.15  (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1        5   655 (131)  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   (179)   650     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   829 
  191    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1    16 
  195  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   635 
  219    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1    44 
  227  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   603 
  247    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1    72 
  255  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   575 
  259    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1    84 
  275  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   555 
  315    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1   140 
  351  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   479 
  367    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1   192 
  407  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   423 
  415    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1   240 
  475  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   355 
  483    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1   308 
  495  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   335 
  503    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1   328 
  595  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   235 
  611    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1   436 
  615  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   215 
  623    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1   448 
  667  C (UMN173R)_F06_BE497784Ld03P176C02P176D051R1_038.ab1   163 
  691    (UMN173F)_F06_BE497784Ld03P176C02P176D051F1_038.ab1   516 
Contig length: old 960, new 961

Contig length: old 961, new 961
New start: 0