No. words: 1639; after pruning: 1613


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:660)  638  0.45 0.15 0.15  (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1        1   661 (143)  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   (174)   661     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   835 
  193    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1    18 
  205  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   631 
  209    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1    34 
  213  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   623 
  221    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1    46 
  233  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   603 
  301    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1   126 
  309  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   527 
  329    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1   154 
  357  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   479 
  373    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1   198 
  417  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   419 
  421    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1   246 
  481  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   355 
  485    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1   310 
  525  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   311 
  529    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1   354 
  601  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   235 
  613    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1   438 
  669  C (UMN173R)_G06_BE497784Ld04P176C02P176D051R1_036.ab1   167 
  693    (UMN173F)_G06_BE497784Ld04P176C02P176D051F1_036.ab1   518 
Contig length: old 978, new 979

Contig length: old 979, new 979
New start: 0