No. words: 1605; after pruning: 1579


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:638)  617  0.63 0.00 0.16  (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1        1   639 (139)  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   (189)   638     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   827 
  245    (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1    56 
  253  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   575 
  325    (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1   136 
  361  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   467 
  369    (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1   180 
  477  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   351 
  513    (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1   324 
  533  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   295 
  537    (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1   348 
  569  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   259 
  585    (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1   396 
  597  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   231 
  609    (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1   420 
  665  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   163 
  689    (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1   500 
  713  C (UMN173R)_H06_BE497784Ld05P176C02P176D051R1_034.ab1   115 
  725    (UMN173F)_H06_BE497784Ld05P176C02P176D051F1_034.ab1   536 
Contig length: old 966, new 967

Contig length: old 967, new 967
New start: 0