No. words: 1622; after pruning: 1596


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:653)  629  0.61 0.00 0.15  (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1        1   654 (129)  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   (186)   653     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   839 
  198    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1    12 
  206  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   634 
  222    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1    36 
  234  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   606 
  254    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1    68 
  262  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   578 
  270    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1    84 
  282  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   558 
  330    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1   144 
  358  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   482 
  374    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1   188 
  418  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   422 
  426    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1   240 
  482  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   358 
  518    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1   332 
  526  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   314 
  542    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1   356 
  606  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   234 
  618    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1   432 
  674  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1   166 
  690    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1   504 
  802  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1    38 
  806    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1   620 
  810  C (UMN173R)_A07_BE497784Ld06P176C02P176D051R1_063.ab1    30 
  822    (UMN173F)_A07_BE497784Ld06P176C02P176D051F1_063.ab1   636 
Contig length: old 968, new 969

Contig length: old 969, new 969
New start: 0