No. words: 1634; after pruning: 1608


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:662)  625  0.90 0.15 0.30  (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1        1   663 (161)  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   (147)   663     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   810 
  168    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1    20 
  176  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   635 
  212    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1    64 
  216  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   595 
  220    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1    72 
  228  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   583 
  236    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1    88 
  252  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   559 
  300    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1   152 
  336  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   475 
  368    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1   220 
  388  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   423 
  392    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1   244 
  452  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   359 
  456    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1   308 
  572  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   239 
  576    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1   428 
  640  C (UMN173R)_B07_BE497784Ld07P176C02P176D051R1_061.ab1   171 
  656    (UMN173F)_B07_BE497784Ld07P176C02P176D051F1_061.ab1   508 
Contig length: old 971, new 972

Contig length: old 972, new 972
New start: 0