No. words: 1619; after pruning: 1593


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:639)  595  1.72 0.00 0.16  (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1        1   640 (146)  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   (194)   639     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   833 
  226    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1    32 
  230  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   604 
  242    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1    48 
  246  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   588 
  250    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1    56 
  254  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   580 
  266    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1    72 
  282  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   552 
  330    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1   136 
  366  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   468 
  406    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1   212 
  418  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   416 
  426    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1   232 
  482  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   352 
  510    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1   316 
  538  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   296 
  546    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1   352 
  586  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   248 
  602    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1   408 
  606  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1   228 
  622    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1   428 
  758  C (UMN173R)_C07_BE497784Ld08P176C02P176D051R1_059.ab1    76 
  762    (UMN173F)_C07_BE497784Ld08P176C02P176D051F1_059.ab1   568 
Contig length: old 979, new 980

Contig length: old 980, new 980
New start: 0