No. words: 1573; after pruning: 1547


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:598)  563  1.17 0.00 0.33  (UMN173F)_E07_BE497784Ld10P176C02P176D051F1_055.ab1        1   600 (139)  C (UMN173R)_E07_BE497784Ld10P176C02P176D051R1_055.ab1   (236)   598     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C (UMN173R)_E07_BE497784Ld10P176C02P176D051R1_055.ab1   834 
  268    (UMN173F)_E07_BE497784Ld10P176C02P176D051F1_055.ab1    32 
  276  C (UMN173R)_E07_BE497784Ld10P176C02P176D051R1_055.ab1   559 
  324    (UMN173F)_E07_BE497784Ld10P176C02P176D051F1_055.ab1    88 
  356  C (UMN173R)_E07_BE497784Ld10P176C02P176D051R1_055.ab1   479 
  376    (UMN173F)_E07_BE497784Ld10P176C02P176D051F1_055.ab1   140 
  400  C (UMN173R)_E07_BE497784Ld10P176C02P176D051R1_055.ab1   435 
  424    (UMN173F)_E07_BE497784Ld10P176C02P176D051F1_055.ab1   188 
  452  C (UMN173R)_E07_BE497784Ld10P176C02P176D051R1_055.ab1   383 
  468    (UMN173F)_E07_BE497784Ld10P176C02P176D051F1_055.ab1   232 
  480  C (UMN173R)_E07_BE497784Ld10P176C02P176D051R1_055.ab1   355 
  500    (UMN173F)_E07_BE497784Ld10P176C02P176D051F1_055.ab1   264 
  536  C (UMN173R)_E07_BE497784Ld10P176C02P176D051R1_055.ab1   299 
  540    (UMN173F)_E07_BE497784Ld10P176C02P176D051F1_055.ab1   304 
  596  C (UMN173R)_E07_BE497784Ld10P176C02P176D051R1_055.ab1   239 
  608    (UMN173F)_E07_BE497784Ld10P176C02P176D051F1_055.ab1   372 
Contig length: old 974, new 975

Contig length: old 975, new 975
New start: 0