No. words: 1429; after pruning: 1403


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:654)  616  1.22 0.15 0.15  (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1        1   655 (46)  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   (73)   655     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   728 
   77    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1     4 
   85  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   644 
  109    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1    35 
  113  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   616 
  329    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1   255 
  337  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   392 
  401    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1   327 
  409  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   320 
  481    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1   407 
  485  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   244 
  501    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1   427 
  509  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   220 
  557    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1   483 
  565  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   164 
  589    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1   515 
  593  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1   136 
  597    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1   523 
  649  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1    80 
  653    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1   579 
  691  C (UMN172R)_C03_BE497784Tu01P176C02P176D051R1_027.ab1    38 
  695    (UMN172F)_C03_BE497784Tu01P176C02P176D051F1_027.ab1   621 
Contig length: old 774, new 775

Contig length: old 775, new 775
New start: 0