No. words: 1397; after pruning: 1371


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:652)  621  1.07 0.00 0.15  (UMN172F)_D03_BE497784Tu02P176C02P176D051F1_025.ab1        1   653 (30)  C (UMN172R)_D03_BE497784Tu02P176C02P176D051R1_025.ab1   (62)   652     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C (UMN172R)_D03_BE497784Tu02P176C02P176D051R1_025.ab1   714 
  110    (UMN172F)_D03_BE497784Tu02P176C02P176D051F1_025.ab1    48 
  114  C (UMN172R)_D03_BE497784Tu02P176C02P176D051R1_025.ab1   601 
  212    (UMN172F)_D03_BE497784Tu02P176C02P176D051F1_025.ab1   150 
  240  C (UMN172R)_D03_BE497784Tu02P176C02P176D051R1_025.ab1   475 
  248    (UMN172F)_D03_BE497784Tu02P176C02P176D051F1_025.ab1   186 
  452  C (UMN172R)_D03_BE497784Tu02P176C02P176D051R1_025.ab1   263 
  488    (UMN172F)_D03_BE497784Tu02P176C02P176D051F1_025.ab1   426 
  552  C (UMN172R)_D03_BE497784Tu02P176C02P176D051R1_025.ab1   163 
  560    (UMN172F)_D03_BE497784Tu02P176C02P176D051F1_025.ab1   498 
  564  C (UMN172R)_D03_BE497784Tu02P176C02P176D051R1_025.ab1   151 
  568    (UMN172F)_D03_BE497784Tu02P176C02P176D051F1_025.ab1   506 
  592  C (UMN172R)_D03_BE497784Tu02P176C02P176D051R1_025.ab1   123 
  596    (UMN172F)_D03_BE497784Tu02P176C02P176D051F1_025.ab1   534 
Contig length: old 744, new 745

Contig length: old 745, new 745
New start: 0