No. words: 1376; after pruning: 1350 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 1 0.0 13.3 (1,1:643) 619 0.31 0.00 0.00 (UMN172F)_C04_BE499696As01P176H02P176H051F1_028.ab1 2 644 (47) C (UMN172R)_C04_BE499696As01P176H02P176H051R1_028.ab1 (42) 643 1 * Pass: 3 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 1 1 0 Offset 0 1 Pass 4 Gap Score Pass: 4 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Read equivalence class histogram: 2 1 Chimera merges: Contig 1: 320 nodes 162 str. conn. components Path 1 C (UMN172R)_C04_BE499696As01P176H02P176H051R1_028.ab1 685 373 (UMN172F)_C04_BE499696As01P176H02P176H051F1_028.ab1 332 577 C (UMN172R)_C04_BE499696As01P176H02P176H051R1_028.ab1 109 585 (UMN172F)_C04_BE499696As01P176H02P176H051F1_028.ab1 544 613 C (UMN172R)_C04_BE499696As01P176H02P176H051R1_028.ab1 73 625 (UMN172F)_C04_BE499696As01P176H02P176H051F1_028.ab1 584 629 C (UMN172R)_C04_BE499696As01P176H02P176H051R1_028.ab1 57 649 (UMN172F)_C04_BE499696As01P176H02P176H051F1_028.ab1 608 661 C (UMN172R)_C04_BE499696As01P176H02P176H051R1_028.ab1 25 669 (UMN172F)_C04_BE499696As01P176H02P176H051F1_028.ab1 628 673 C (UMN172R)_C04_BE499696As01P176H02P176H051R1_028.ab1 13 677 (UMN172F)_C04_BE499696As01P176H02P176H051F1_028.ab1 636 Contig length: old 732, new 732 Contig length: old 732, new 732 New start: 0